Michael Ashburner - Publications on Genomics
Urls and doi's have been added to details of publications where these are available. Doi's (document object identifiers) can be accessed by prefixing with: http://dx.doi.org/
- R. D. C. Saunders, D. M. Glover, M. Ashburner, I. Siden-Kiamos, K. Louis, M. Monastirioti, C. Savakis and F. C. Kafatos. 1989. PCR amplification of DNA microdissected from a single polytene chromosome band: A comparison with conventional microcloning. Nucleic Acids Research 17: 9027-9037.
http://nar.oxfordjournals.org/cgi/reprint/17/22/9027 - I. Siden-Kiamos, R. Saunders, L. Spanos, T. Majerus, J. Trenear, C. Savakis, C. Louis, D. Glover, M. Ashburner and F. C. Kafatos. 1990. Towards a physical map of the Drosophila melanogaster genome: mapping of cosmid clones within defined genomic divisions. Nucleic Acids Res. 18: 6261-6270.
http://nar.oxfordjournals.org/cgi/reprint/18/21/6261 - F.C. Kafatos, C. Louis, C. Savakis, D.M. Glover, M. Ashburner, A.J. Link, I. Siden-Kiamos and R.D.C. Saunders. 1991. Integrated maps of the Drosophila genome: Progress and prospects. Trends in Genetics 7: 155-161.
doi:10.1016/0168-9525(91)90379-5 - J. Merriam, M. Ashburner, D.L. Hartl and F.C. Kafatos. 1991. Towards cloning and mapping the genome of Drosophila. Science 254: 221-225.
doi:10.1126/science.1925579 - M. Ashburner, D.M. Glover, R.D.C. Saunders, I. Duncan, D. Hartl, J. Merriam, G. Lee, J. Johnsen, F.C. Kafatos, I. Siden- Kiamos, C. Louis and C. Savakis. 1991. Genome Maps 1991: Drosophila melanogaster. Science 254 (Supplement).
doi:10.1126/science.1925580 - M. Ashburner. 1992. Mapping Insect Genomes. In: Insect Molecular Science (eds. J.M. Crampton and P. Eggleston). Academic Press, London. pp. 51-75.
- M. Ashburner and N. Maizels. 1992. Editorial Overview. Genomes and Evolution. Current Opinion in Genetics & Development 2: 841-843.
doi:10.1016/S0959-437X(05)80104-2 - R.D.C. Saunders, M. Ashburner, D. Coulson, D.M. Glover, F.C. Kafatos, C. Louis, J. Modolell, G.A. Rimmington, C. Savakis, I. Siden-Kiamos, 1993. Polytene chromosome microdissection and molecular genome mapping in Drosophila and other Dipterans. Parasitologia (Suppl.) 35: 99-102.
- E. Madueño, G. Papagiannakis, G. Rimmington, R.D.C. Saunders, C. Savakis, I. Sidén-Kiamos, G. Skavdis, L. Spanos, J. Trennear, P. Adam, M. Ashburner, P. Benos, V.N. Bolshakov, S. Herrmann, D. Coulson, D.M. Glover, F.C. Kafatos, C. Louis, T. Majerus and J. Modolell. 1995. A physical map of the X chromosome of Drosophila melanogaster: Cosmid contigs and sequence tagged sites. Genetics 139: 1631-1647.
http://www.genetics.org/cgi/reprint/139/4/1631 - C. Louis, E. Madueno, J. Modolell, M.M. Omar, G. Papagiannaki, R.D.C. Saunders, C. Savakis, I. Siden-Kiamos, L. Spanos, P. Topalis, Y. Zhang, M. Ashburner, P. Benos, V.N. Bolshakov, P. Deak, D.M. Glover, S. Herrmann and F.C. Kafatos. 1997. 105 new potential Drosophila melanogaster genes revealed through STS analysis. Gene 195: 187-193.
doi:10.1016/S0378-1119(97)00138-8 - M. Ashburner and N. Maizels. 1997. Editorial overview. Genomes and evolution Post-genome, pre-chromosome. Current Opinion in Genetics & Development 7: 747-749.
doi:10.1016/S0959-437X(97)80035-4 - P. Deak, M.M. Omar, R.D.C. Saunders, M. Pal, O. Komonyi, J. Szidonya, P. Maroy, Y. Zhang, M. Ashburner, P. Benos, C. Savakis, I. Siden-Kiamos, C. Louis, V.N. Bolshakov, F.C. Kafatos, E. Madueno, J. Modolell and D.M. Glover. 1997. P-element insertion alleles of essential genes on the third chromosome of Drosophila melanogaster. Correlation of physical and cytogenetic maps in chromosomal region 86E-87F. Genetics 147: 1697-1722.
http://www.genetics.org/cgi/reprint/147/4/1697 - M. Ashburner [et al] 1999. An exploration of the sequence of a 2.9-Mb region of the genome of Drosophila melanogaster - The ‘Adh’ region. Genetics 153: 179-219.
http://www.genetics.org/cgi/reprint/153/1/179 - M. Ashburner. 2000. A biologist’s view of the Drosophila Genome Annotation Assessment Project. Genome Research 10: 391-393.
http://genome.cshlp.org/content/10/4/391.full?sid=6e8f1e7e-3081-4465-bb1c-1478b9db4c69
doi: 10.1101/gr.10.4.391 - S. Lewis, M. Ashburner and M. Reese. 2000. Annotating eukaryote genomes. Current Opinion in Structural Biology 10: 349-354.
doi:10.1016/S0959-440X(00)00095-6 - G.M Rubin [et al]. 2000. Comparative genomics of the eukaryotes. Science 287: 2204-2215.
http://www.sciencemag.org/cgi/content/full/sci;287/5461/2204
doi:10.1126/science.287.5461.2204 - M.D Adams [et al]. 2000. The genome sequence of Drosophila melanogaster. Science 287: 2185-2195.
http://www.sciencemag.org/cgi/content/full/sci;287/5461/2185
doi:10.1126/science.287.5461.2185 - P.V. Benos, M.K. Gatt, M. Ashburner [et al]. 2000. From sequence to chromosome: The tip of the X chromosome of D. melanogaster. Science 287: 2220-2222.
http://www.sciencemag.org/cgi/content/full/sci;287/5461/2220
doi:10.1126/science.287.5461.2220 - The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium. 2001. Functional annotation of a full-length mouse DNA collection. Nature 409: 685-690.
http://www.nature.com/nature/journal/v409/n6821/full/409685a0.html
doi:10.1038/35055500 - P.V. Benos, M.K. Gatt, M. Ashburner [et al]. 2001. From First Base: The Sequence of the tip of the X Chromosome of Drosophila melanogaster, a Comparison of Two Sequencing Strategies. Genome Research 11: 710-730.
http://genome.cshlp.org/content/11/5/710.full?sid=6e8f1e7e-3081-4465-bb1c-1478b9db4c69
doi: 10.1101/gr.173801
- A. Peter [et al]. 2002. Mapping and identification of essential gene functions on the X chromosome of Drosophila. EMBO Reports 3: 34-38.
http://www.nature.com/embor/journal/v3/n1/full/embor247.html
doi:10.1093/embo-reports/kvf012 - P. Tomancak, A. Beaton, R. Weiszman, E. Kwan, S. ShegQiang, S.E. Lewis, S. Richards, M. Ashburner, V. Hartenstein, S. Celniker and G.M. Rubin. 2002. Systematic determination of patterns of gene expression during Drosophila embryogenesis. Genome Biology 3(12): 0088.1-0088.14.
http://genomebiology.com/2002/3/12/research/0088
doi:10.1186/gb-2002-3-12-research0088 - J.S. Kaminker, C. Bergman, B. Kronmiller, J. Carlson, R. Svirskas, S. Patel, E. Frise, D. A. Wheeler, S.E. Lewis, G.M. Rubin, M. Ashburner and S. Celniker. 2002. The transposable elements of Drosophila melanogaster – a genomics perspective. Genome Biology 3(12): 0084.1-0084.20.
http://genomebiology.com/2002/3/12/research/0084
doi:10.1186/gb-2002-3-12-research0084
- S. Misra [et al]. 2002. Annotation of the Drosophila melanogaster euchromatic genome: a systematic review. Genome Biology 3(12): 0083.1-0083.22.
http://genomebiology.com/2002/3/12/research/0083
doi:10.1186/gb-2002-3-12-research0083 - M. Ashburner. 2002. A hat trick – Plasmodium, Anopheles and Homo. Genome Biology 4: 103-103.4.
http://genomebiology.com/2002/4/1/103
doi:10.1186/gb-2002-4-1-103 - E. Ryder, F. Blows, M. Ashburner, R. Bautista-Llacer, D. Coulson, J. Drummond [et al]. 2004. The DrosDel collection: a set of P-element insertions for generating custom chromosomal aberrations in Drosophila melanogaster. Genetics 167: 797-813.
http://www.genetics.org/cgi/reprint/167/2/797 - H. Quesneville, C.M. Bergman, O. Andrieu, D. Autard, D. Nouaud, M. Ashburner and D. Anxolabehere. 2005. Combined evidence annotation of transposable elements in genome sequences. PLOS Comp. Biol. 1: 166-175.
http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.0010022
doi:10.1371/journal.pcbi.0010022 - M. Ashburner. 2005. The genomes of Diptera In: The Evolutionary Biology of Flies. Edited by B. Wiegmann. Columbia University Press. pp. 65-125.
- M. Ashburner and C.M. Bergman. 2005. Drosophila melanogaster: A case study of a model genomic sequence and its consequences. Genome Research 15: 1661-1667. [Reprinted in Genomes. Perspectives from the 10th Anniversary Issue of Genome Research. Edited by H.E. Sussman and M.A. Smit. Cold Spring Harbor Laboratory Press, New York. pp.143-158.]
http://genome.cshlp.org/content/15/12/1661.full
doi: 10.1101/gr.3726705 - M. Ashburner and C.P. Kyriacou. 2006. Getting a buzz out of the bee genome. Genome Biol. 7: 239.
http://genomebiology.com/2006/7/10/239
doi:10.1186/gb-2006-7-10-239 - C.M. Bergman, H. Quesneville, D. Anxolabehere and M. Ashburner. 2006. Recurrent insertion and duplication generate networks of transposable element sequences in the Drosophila melanogaster genome. Genome Biol. 7: R112.
http://genomebiology.com/2006/7/11/R112
doi:10.1186/gb-2006-7-11-r112 - E. Ryder, M. Ashburner, R. Bautista-Llacer, J. Drummond, J. Webster, D. Gubb, G. Johnson, T. Morley, Y. Sang Chan, F. Blows, D. Coulson [et al]. 2007. The DrosDel Deletion Set: A Drosophila Genome-Wide Chromosomal Deficiency Resource. Genetics 177: 615—629.
http://www.genetics.org/cgi/reprint/177/1/615 - J.M. Ranz, D. Maurin, Y. S. Chan, M. von Grotthuss, L.W. Hillier, J. Roote, M. Ashburner, C.M. Bergman. 2007. Principles of genome evolution in the Drosophila melanogaster species group. PLoS Biol. 5(6): e152.
http://www.plosbiology.org/article/info%3Adoi%2F10.1371%2Fjournal.pbio.0050152
doi:10.1371/journal.pbio.0050152 - M. Ashburner. 2007. Drosophila genomes by the baker's dozen. Genetics 177: 1263-1268.
http://www.genetics.org/cgi/reprint/177/3/1263
Page compiled 9 Sept 2009